Besides the change of location and the target being Wall Street, Ubisoft didn't mention a whole lot on the story itself or how the changes still make it resemble Rainbow Six 1 and not an original game.
If its anything like GoldenEye for the Wii, they might change around some of the places and order the missions take place but also kept most of the actual story unchanged. In this case, Ubisoft might keep the story still being the debut of the Rainbow team and the virus as the main problem.
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